PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_7417_iso_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 587aa    MW: 64594.6 Da    PI: 4.2729
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_7417_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08272320247
                                          SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
                      Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                                           +W++eE++++ ++v+  +       W+  a +++  Rt ++++s+++++
  cra_locus_7417_iso_1_len_2139_ver_3 272 EKWSEEEELIFHEVVANSPATlgknFWDYLATEFP-SRTKNEIVSYYFNV 320
                                          58*************8755555555**********.***********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.36E-6269321IPR009057Homeodomain-like
SMARTSM007170.0019270323IPR001005SANT/Myb domain
PfamPF002499.0E-7272320IPR001005SANT/Myb domain
CDDcd001672.05E-7273321No hitNo description
Gene3DG3DSA:1.10.10.607.2E-6273319IPR009057Homeodomain-like
PROSITE profilePS500906.295273321IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MVQKRPHGEE LYEISSKQPR RLESSDEVVS SLEFPDENVA SNPHALGEFG QFPSKSKPEY  60
DEMLNGGNGA ELRTFLEKEI EASVPASFSN SSWATSKTSE EDIRLEPPFH LVLSPDHQNI  120
VHPTRTIIHV GDLYSSLLEY PPLKPVPVGK DYQAEIPEWG SLGAEQNSIC SEEISEAPNL  180
PSQSSKSDIS GNSDDDSRLA GTCIIPMPDL DISEDNVEKI GAGRINCSCG DEGSIRCVQQ  240
HITEAREKLR AALGEETFVK LGFSDMGEVV SEKWSEEEEL IFHEVVANSP ATLGKNFWDY  300
LATEFPSRTK NEIVSYYFNV FMLKKRALQN RCDPLNIDSD NDEWEETEYS AEYVIDTGKE  360
GYSPGVRSPG YEDAFGHDEF HENVHKSSED GYAKISGNDE YKHLSDNKVI VSENFCVPAF  420
DNHNTVAAFL QSDKFNEDAH EPSKAGAPET AGQGANQNFC ENKVTSNAAE HFSAEGSDNH  480
CSVPTLQPSV GFLLNEPAGQ DVQGGVCAPD NAGMAPEVSS EKADARRHWT GSPRGKGQAF  540
LLEPCSSCKE WEGGYLTRPK NEDFLSTCSM IEEVFGNGSL NDKNSDG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15141625